Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
9
Hi-C
6
single cell RNA-seq
5
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
40
DNA binding
11
Transcription
9
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
33
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
26
October, 2019
13
May, 2019
7
July, 2019
6
August, 2021
5
February, 2020
3
March, 2020
2
February, 2021
1
November, 2017
Available data
41
bam
12
tsv
7
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bed narrowPeak
2
bedpe bed3+
2
bigBed broadPeak
2
bigBed narrowPeak
2
hdf5
2
tagAlign
1
fastq
1
tar
Organism
63
Homo sapiens
Biosample type
48
tissue
13
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
GRCh38
234
hg19
Lab
63
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
63 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
single cell RNA-seq
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
tibial nerve
11
1
aorta
2
1
4
1
1
tibial artery
5
1
gastrocnemius medialis
4
1
ascending aorta
3
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download