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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
4
Hi-C
3
total RNA-seq
1
ATAC-seq
1
ChIP-seq
Assay category
9
DNA accessibility
4
3D chromatin structure
3
Transcription
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
8
January, 2021
4
July, 2019
3
February, 2020
1
January, 2018
1
October, 2019
Available data
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
17
Homo sapiens
Biosample type
8
primary cell
8
tissue
1
cell line
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
9
AMP
8
T1D
Genome assembly (visualization)
1
hg19
Lab
9
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
17 results
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Clear Filters
snATAC-seq
Hi-C
total RNA-seq
ATAC-seq
ChIP-seq
primary cell
peripheral blood mononuclear cell
8
tissue
gastrocnemius medialis
4
1
islet of Langerhans
1
tibial artery
1
tibial nerve
1
cell line
GM12878
1
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