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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
64
DNase-seq
19
total RNA-seq
9
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
141
DNA binding
74
DNA accessibility
26
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
116
histone
116
histone modification
71
broad histone mark
45
narrow histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
206
bam
185
bigWig
172
bed narrowPeak
165
bigBed narrowPeak
80
tagAlign
79
bed broadPeak
70
bigBed broadPeak
67
bed bed3+
28
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
253
Homo sapiens
Biosample type
232
tissue
21
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
253
AMP
Genome assembly (visualization)
183
GRCh38
130
hg19
Lab
253
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
brain
15
14
1
1
layer of hippocampus
22
muscle of leg
7
13
1
caudate nucleus
15
1
1
muscle of arm
17
+ See 36 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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