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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
86
total RNA-seq
84
RNA microarray
68
DNase-seq
18
ATAC-seq
7
Hi-C
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
1
WGBS
Assay category
284
DNA binding
93
Transcription
87
DNA accessibility
7
3D chromatin structure
3
DNA methylation
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
150
February, 2021
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
417
bam
371
bigWig
297
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
91
tsv
88
txt
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
21
fastq
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
561
Homo sapiens
Biosample type
539
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
560
AMP
1
T1D
Genome assembly (visualization)
373
GRCh38
324
hg19
Lab
560
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
561 results
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ChIP-seq
total RNA-seq
RNA microarray
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
WGBS
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
brain
20
1
14
1
1
tibial artery
23
1
2
1
+ See 98 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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