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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
pCHi-C
Assay category
66
DNA binding
18
DNA accessibility
16
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
19
April, 2020
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
8
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
105
tissue
Organ
933
pancreas
725
liver
672
connective tissue
496
epithelium
487
adipose tissue
355
heart
272
kidney
246
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
59
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
19
LungMap
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
86
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bigBed broadPeak
bed bedMethyl
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
lung
10
9
1
muscle of leg
7
gastrocnemius medialis
1
4
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