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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
1
pCHi-C
Assay category
88
DNA binding
54
DNA accessibility
30
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
69
October, 2019
32
June, 2019
19
April, 2020
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
1
March, 2020
Available data
150
bam
120
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
22
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
178
Homo sapiens
Biosample type
142
tissue
29
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
19
LungMap
Genome assembly (visualization)
125
GRCh38
125
hg19
1
hg18
Lab
160
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
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in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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