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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
98
DNA binding
15
Transcription
9
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
65
October, 2019
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
1
January, 2018
1
May, 2022
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
135
Homo sapiens
Biosample type
122
tissue
13
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
93
hg19
74
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
5
1
skeletal muscle tissue
22
1
1
4
1
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 9 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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