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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
42
DNA binding
15
Transcription
10
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
22
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
26
August, 2017
23
October, 2019
10
July, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
131
bam
120
bigWig
114
bed narrowPeak
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
75
tissue
5
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
38
hg19
19
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
tibial nerve
11
5
1
tibial artery
5
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 9 more…
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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