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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
37
DNase-seq
12
total RNA-seq
10
ATAC-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
158
DNA binding
56
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
77
histone
77
histone modification
51
transcription factor
50
broad histone mark
28
control
27
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
Available data
191
bam
175
bigWig
168
bed narrowPeak
147
bigBed narrowPeak
62
fastq
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
242
Homo sapiens
Biosample type
159
tissue
61
cell line
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
8
T1D
Genome assembly (visualization)
186
hg19
165
GRCh38
Lab
234
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
4
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 12 more…
cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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