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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
67
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
67
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
115
bam
93
bed narrowPeak
92
bigWig
84
bigBed narrowPeak
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
88
Homo sapiens
Biosample type
88
tissue
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
61
GRCh38
61
hg19
Lab
88
AMP-T2D consortium
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
1
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