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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
69
DNase-seq
24
total RNA-seq
13
ATAC-seq
7
Hi-C
4
small RNA-seq
3
WGBS
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
304
DNA binding
83
DNA accessibility
31
Transcription
7
3D chromatin structure
5
DNA methylation
Target of assay
242
histone
242
histone modification
134
narrow histone mark
108
broad histone mark
56
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
17
October, 2017
15
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
6
February, 2021
3
March, 2020
1
February, 2023
Available data
381
bam
329
bigWig
309
bed narrowPeak
224
bigBed narrowPeak
118
tagAlign
84
bed broadPeak
75
bigBed broadPeak
72
bed bed3+
45
fastq
34
tsv
5
bed bedMethyl
5
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
433
Homo sapiens
Biosample type
412
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
433
AMP
Genome assembly (visualization)
329
GRCh38
274
hg19
Lab
433
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
433 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
spleen
20
1
1
2
1
layer of hippocampus
23
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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