Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
47
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
134
bam
106
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
144
Homo sapiens
Biosample type
122
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
Genome assembly (visualization)
113
hg19
108
GRCh38
Lab
144
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
mammary gland
embryo
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
See all biosamples
Download