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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
156
ChIP-seq
40
DNase-seq
14
ATAC-seq
7
WGBS
6
Hi-C
3
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
408
Transcription
156
DNA binding
55
DNA accessibility
7
DNA methylation
6
3D chromatin structure
Target of assay
96
histone
96
histone modification
63
broad histone mark
43
control
33
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
91
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
576
bam
531
bigWig
408
tsv
118
bed narrowPeak
107
bigBed narrowPeak
44
bed bed3+
44
fastq
43
bed broadPeak
42
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
tar
Organism
634
Homo sapiens
Biosample type
610
tissue
24
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
635
AMP
Genome assembly (visualization)
539
hg19
532
GRCh38
Lab
635
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
635 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
subcutaneous adipose tissue
7
12
1
1
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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