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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
36
DNA accessibility
32
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
37
October, 2019
32
June, 2019
5
July, 2019
3
February, 2020
3
May, 2019
Available data
72
bam
55
bigWig
50
bed narrowPeak
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
80
tissue
Organ
726
liver
716
pancreas
615
connective tissue
465
adipose tissue
377
epithelium
269
heart
264
kidney
212
brain
147
bone element
145
vasculature
139
blood vessel
82
artery
80
limb
75
musculature of body
68
blood
68
bodily fluid
33
embryo
33
eye
26
nerve
20
lung
20
spleen
18
ureter
13
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
19
5
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
gastrocnemius medialis
1
4
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