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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
112
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
112
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
57
October, 2019
45
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
5
February, 2020
5
May, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
541
bam
500
bigWig
408
tsv
89
bed narrowPeak
79
bigBed narrowPeak
43
fastq
42
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
5
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
585
Homo sapiens
Biosample type
583
tissue
2
primary cell
1
in vitro differentiated cells
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
586
AMP
Genome assembly (visualization)
506
GRCh38
506
hg19
Lab
586
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
586 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
tibial nerve
5
27
2
1
subcutaneous abdominal adipose tissue
25
3
tibial artery
1
19
2
1
subcutaneous adipose tissue
7
12
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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