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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
5
December, 2019
2
July, 2019
2
June, 2019
1
October, 2019
Available data
8
bam
8
bigWig
5
tsv
3
bed bed3+
3
bed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
10
Homo sapiens
Biosample type
206
tissue
23
cell line
10
primary cell
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
10
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
10 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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