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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
358
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
40
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
346
fastq
345
bam
311
bigWig
288
bed narrowPeak
273
bigBed narrowPeak
54
bed broadPeak
54
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
380
Homo sapiens
Biosample type
380
cell line
354
tissue
14
in vitro differentiated cells
13
primary cell
Organ
380
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
51
blood
51
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
380
AMP
Genome assembly (visualization)
310
hg19
249
GRCh38
Lab
349
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
assay_slims!
DNA methylation
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
358
14
2
2
2
1
1
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