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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
14
Transcription
2
3D chromatin structure
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
1
December, 2018
1
February, 2021
1
May, 2020
Available data
367
fastq
365
bam
332
bigWig
307
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
400
Homo sapiens
Biosample type
400
cell line
336
tissue
15
in vitro differentiated cells
11
primary cell
Organ
400
liver
72
pancreas
60
blood
60
bodily fluid
59
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
18
kidney
8
embryo
1
mammary gland
Project
400
AMP
Genome assembly (visualization)
329
hg19
267
GRCh38
Lab
369
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
1
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