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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
31
Transcription
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
31
August, 2021
27
August, 2017
20
May, 2022
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
596
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
89
Homo sapiens
Biosample type
52
tissue
35
cell line
2
primary cell
Organ
159
pancreas
127
kidney
126
epithelium
107
heart
89
bone element
89
liver
71
connective tissue
46
adipose tissue
41
brain
37
musculature of body
26
eye
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
20
hg19
Lab
38
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
assay_slims!
DNA accessibility
files.file_type!
bam
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
1
3
1
1
1
right lobe of liver
1
1
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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