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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
185
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
186
Transcription
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
35
August, 2021
20
May, 2022
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
666
bam
588
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
167
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
vcf
Organism
752
Homo sapiens
Biosample type
400
cell line
328
tissue
15
in vitro differentiated cells
9
primary cell
Organ
767
pancreas
752
liver
632
connective tissue
471
adipose tissue
388
epithelium
255
heart
233
brain
181
kidney
168
vasculature
165
blood vessel
147
bone element
90
artery
73
limb
60
blood
60
bodily fluid
51
musculature of body
40
nerve
37
embryo
28
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
752
AMP
Genome assembly (visualization)
588
hg19
516
GRCh38
Lab
701
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
July, 2019
BIOSAMPLE
ASSAY
752 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
145
165
3
1
1
1
1
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
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