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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
29
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
November, 2018
2
August, 2017
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
189
bigWig
174
tsv
170
bam
28
bed narrowPeak
10
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
232
Homo sapiens
Biosample type
201
tissue
22
cell line
9
primary cell
Organ
675
pancreas
524
connective tissue
412
adipose tissue
342
epithelium
298
kidney
249
heart
232
liver
159
bone element
131
vasculature
129
blood vessel
107
artery
66
brain
55
eye
55
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
194
hg19
170
GRCh38
Lab
179
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
DNA methylation
BIOSAMPLE
ASSAY
232 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
1
1
1
1
right lobe of liver
3
1
2
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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