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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
October, 2019
Available data
174
tsv
163
bigWig
162
bam
6
fastq
2
bed bed3+
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
203
Homo sapiens
Biosample type
176
tissue
21
cell line
6
primary cell
Organ
502
pancreas
490
connective tissue
404
adipose tissue
219
epithelium
203
liver
172
heart
147
bone element
135
kidney
73
blood vessel
73
vasculature
58
artery
29
brain
23
eye
16
musculature of body
15
embryo
11
limb
10
lung
5
nerve
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
203
AMP
Genome assembly (visualization)
166
hg19
162
GRCh38
Lab
170
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
DNA methylation
DNA accessibility
BIOSAMPLE
ASSAY
203 results
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total RNA-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
1
1
1
1
right lobe of liver
3
2
cell line
HepG2
14
2
2
2
1
primary cell
hepatocyte
5
endothelial cell of hepatic sinusoid
1
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