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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
40
May, 2022
13
August, 2021
5
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
Available data
190
bigWig
174
tsv
bam
28
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
68
Homo sapiens
Biosample type
50
tissue
16
cell line
2
primary cell
Organ
237
pancreas
210
kidney
207
epithelium
141
heart
93
bone element
68
liver
52
eye
51
vasculature
50
blood vessel
40
connective tissue
39
artery
21
brain
20
lung
17
musculature of body
13
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
26
hg19
Lab
40
Karen Mohlke, UNC
15
AMP-T2D consortium
13
Bing Ren, UCSD
assay_slims!
DNA binding
files.file_type!
bam
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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