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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
5
total RNA-seq
3
DNase-seq
1
ATAC-seq
1
Hi-C
Assay category
452
DNA binding
5
Transcription
4
DNA accessibility
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
52
November, 2018
26
August, 2017
5
January, 2019
1
December, 2018
Available data
680
bam
621
bigWig
462
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
462
Homo sapiens
Biosample type
366
cell line
81
tissue
15
in vitro differentiated cells
Organ
462
liver
461
pancreas
251
epithelium
98
connective tissue
60
blood
60
bodily fluid
41
adipose tissue
27
embryo
22
spleen
21
brain
6
vasculature
3
blood vessel
Project
462
AMP
Genome assembly (visualization)
389
hg19
342
GRCh38
Lab
462
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
462 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
cell line
HepG2
360
5
1
tissue
liver
67
2
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
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