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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
544
DNA binding
193
Transcription
38
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
50
August, 2017
46
November, 2018
40
May, 2022
34
August, 2021
26
December, 2018
17
January, 2019
8
January, 2021
8
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
673
bam
610
bigWig
455
fastq
429
bed narrowPeak
347
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
785
Homo sapiens
Biosample type
397
cell line
354
tissue
21
primary cell
13
in vitro differentiated cells
Organ
884
pancreas
726
liver
667
connective tissue
480
adipose tissue
463
epithelium
372
heart
347
kidney
281
brain
228
vasculature
224
blood vessel
159
bone element
140
artery
121
limb
90
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
777
AMP
8
T1D
Genome assembly (visualization)
613
hg19
523
GRCh38
Lab
707
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
785 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
324
14
1
2
2
2
1
GM12878
50
1
tissue
liver
144
167
20
2
1
1
1
1
right lobe of liver
9
3
1
2
2
primary cell
hepatocyte
4
5
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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