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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
525
ChIP-seq
184
total RNA-seq
22
ATAC-seq
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
525
DNA binding
188
Transcription
26
DNA accessibility
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
50
August, 2017
47
November, 2018
40
May, 2022
31
August, 2021
7
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
645
bam
587
bigWig
439
fastq
412
bed narrowPeak
333
bigBed narrowPeak
169
tsv
82
tagAlign
57
bed broadPeak
57
bigBed broadPeak
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
748
Homo sapiens
Biosample type
380
cell line
354
tissue
14
in vitro differentiated cells
primary cell
Organ
748
liver
637
connective tissue
594
pancreas
483
adipose tissue
371
heart
317
kidney
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
117
epithelium
77
musculature of body
56
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
748
AMP
Genome assembly (visualization)
588
hg19
498
GRCh38
Lab
677
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA methylation
target.investigated_as!
chromatin remodeller
biosample_type!
primary cell
BIOSAMPLE
ASSAY
748 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
2
2
2
1
tissue
liver
143
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
14
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