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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
6
August, 2017
4
August, 2021
4
November, 2018
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
May, 2020
1
October, 2019
Available data
28
bed narrowPeak
28
bigWig
9
bam
8
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
46
Homo sapiens
Biosample type
32
tissue
9
cell line
5
primary cell
Organ
249
pancreas
194
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
34
hg19
9
GRCh38
Lab
22
AMP-T2D consortium
20
Karen Mohlke, UNC
4
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
Transcription
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
46 results
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ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
20
2
3
1
1
1
right lobe of liver
1
2
1
cell line
HepG2
1
1
2
2
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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