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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
5
October, 2019
3
July, 2019
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2021
Available data
516
bam
459
fastq
439
bigWig
418
bed narrowPeak
357
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
hdf5
1
vcf
Organism
575
Homo sapiens
Biosample type
386
cell line
166
tissue
15
in vitro differentiated cells
8
primary cell
Organ
575
liver
315
pancreas
258
brain
220
epithelium
180
heart
178
connective tissue
154
kidney
123
vasculature
117
blood vessel
107
limb
86
musculature of body
85
bone element
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
24
spleen
23
embryo
22
vein
18
ureter
14
eye
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
575
AMP
Genome assembly (visualization)
440
hg19
366
GRCh38
Lab
553
AMP-T2D consortium
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
assay_title!
ATAC-seq
organ_slims!
lymph node
BIOSAMPLE
ASSAY
575 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
2
1
tissue
liver
145
2
3
1
1
1
right lobe of liver
10
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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