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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
488
ChIP-seq
23
ATAC-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
488
DNA binding
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
292
transcription factor
107
control
86
histone modification
85
histone
82
recombinant protein
54
RNA binding protein
52
narrow histone mark
33
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
63
December, 2017
51
August, 2017
51
May, 2020
50
November, 2018
23
August, 2021
20
May, 2022
6
October, 2019
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2021
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
527
Homo sapiens
Biosample type
328
cell line
181
tissue
15
in vitro differentiated cells
3
primary cell
Organ
527
liver
438
pancreas
296
epithelium
221
brain
197
heart
175
connective tissue
151
kidney
150
vasculature
148
blood vessel
97
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
527
AMP
Genome assembly (visualization)
392
hg19
314
GRCh38
Lab
485
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
bigBed broadPeak
BIOSAMPLE
ASSAY
527 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
cell line
HepG2
320
1
1
2
2
1
1
tissue
liver
142
20
3
1
1
1
right lobe of liver
10
1
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
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