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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
4
WGBS
3
Hi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
119
DNA binding
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
35
August, 2017
24
May, 2020
13
December, 2017
9
August, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2021
1
November, 2018
1
October, 2019
Available data
519
bam
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
136
Homo sapiens
Biosample type
73
tissue
59
cell line
3
primary cell
1
in vitro differentiated cells
Organ
248
pancreas
168
epithelium
136
liver
110
kidney
99
connective tissue
97
bone element
73
heart
72
vasculature
71
blood vessel
63
adipose tissue
52
artery
52
brain
36
eye
28
limb
24
musculature of body
14
blood
14
bodily fluid
12
skeleton
11
lung
11
nerve
9
spleen
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
128
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_slims!
Transcription
files.file_type!
bed bed3+
bigWig
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
ATAC-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
tissue
liver
62
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
2
1
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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