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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
496
ChIP-seq
23
ATAC-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
pCHi-C
1
whole genome sequencing assay
Assay category
496
DNA binding
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
84
control
82
recombinant protein
73
histone modification
72
histone
58
RNA binding protein
41
broad histone mark
31
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
51
August, 2017
May, 2020
50
November, 2018
23
August, 2021
20
May, 2022
6
October, 2019
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2021
Available data
469
bam
460
fastq
433
bigWig
414
bed narrowPeak
358
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
36
tagAlign
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
tsv
1
vcf
Organism
534
Homo sapiens
Biosample type
385
cell line
131
tissue
15
in vitro differentiated cells
3
primary cell
Organ
534
liver
438
pancreas
302
epithelium
227
brain
197
heart
176
connective tissue
156
vasculature
152
blood vessel
151
kidney
97
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
20
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
534
AMP
Genome assembly (visualization)
423
hg19
339
GRCh38
Lab
492
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
month_released!
May, 2020
BIOSAMPLE
ASSAY
534 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
STARR-seq
DNase-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
1
tissue
liver
92
20
3
1
1
1
right lobe of liver
10
1
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
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