Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
439
ChIP-seq
23
ATAC-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
439
DNA binding
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
50
December, 2017
50
November, 2018
41
August, 2017
28
May, 2020
20
May, 2022
18
August, 2021
6
October, 2019
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2021
Available data
447
bigWig
441
bed narrowPeak
418
bam
383
fastq
358
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
478
Homo sapiens
Biosample type
326
cell line
136
tissue
14
in vitro differentiated cells
2
primary cell
Organ
478
liver
387
pancreas
272
epithelium
199
brain
177
heart
142
connective tissue
139
kidney
134
vasculature
131
blood vessel
97
bone element
70
artery
63
blood
63
bodily fluid
62
limb
60
adipose tissue
47
musculature of body
37
eye
25
nerve
18
vein
16
spleen
14
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
437
hg19
358
GRCh38
Lab
440
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
478 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
cell line
HepG2
318
1
1
2
2
1
1
tissue
liver
100
20
3
1
1
1
right lobe of liver
7
1
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
Download