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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
3
DNase-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
49
DNA binding
Transcription
3
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
49
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
53
bam
53
bigWig
53
fastq
51
bed narrowPeak
51
bigBed narrowPeak
4
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
hdf5
Organism
56
Homo sapiens
Biosample type
46
cell line
8
tissue
2
primary cell
Organ
56
liver
15
blood
15
bodily fluid
14
heart
9
brain
9
pancreas
9
spleen
8
epithelium
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
3
connective tissue
1
adipose tissue
1
artery
1
eye
1
pericardium
Project
56
AMP
Genome assembly (visualization)
52
GRCh38
51
hg19
Lab
56
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
DNase-seq
WGBS
Hi-C
RRBS
cell line
HepG2
45
1
tissue
liver
4
2
right lobe of liver
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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