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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
whole genome sequencing assay
Assay category
533
DNA binding
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
54
August, 2017
53
November, 2018
51
May, 2020
48
December, 2017
22
August, 2021
20
May, 2022
5
October, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
July, 2019
1
June, 2019
Available data
498
bam
445
fastq
441
bigWig
422
bed narrowPeak
343
bigBed narrowPeak
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tsv
1
bed bed3
1
vcf
Organism
575
Homo sapiens
Biosample type
387
cell line
187
tissue
1
primary cell
Organ
598
liver
467
pancreas
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
575
AMP
Genome assembly (visualization)
442
hg19
350
GRCh38
Lab
533
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
epithelium
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
2
1
tissue
liver
145
20
2
3
1
1
1
right lobe of liver
10
1
2
1
primary cell
hepatic stellate cell
1
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