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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
63
December, 2017
53
November, 2018
34
August, 2017
22
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
May, 2020
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
512
Homo sapiens
Biosample type
375
cell line
117
tissue
15
in vitro differentiated cells
5
primary cell
Organ
512
liver
448
pancreas
316
epithelium
229
kidney
221
heart
181
connective tissue
163
vasculature
157
blood vessel
144
brain
115
limb
bone element
82
adipose tissue
77
artery
72
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
512
AMP
Genome assembly (visualization)
421
hg19
338
GRCh38
Lab
470
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
bone element
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
512 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
366
1
1
2
2
2
1
tissue
liver
75
20
2
3
1
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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