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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
25
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
1
December, 2018
1
March, 2020
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
596
Homo sapiens
Biosample type
386
cell line
186
tissue
15
in vitro differentiated cells
9
primary cell
Organ
596
liver
460
pancreas
318
epithelium
262
brain
229
kidney
224
heart
202
connective tissue
167
vasculature
161
blood vessel
115
limb
97
bone element
89
adipose tissue
85
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
stomach
1
urinary bladder
Project
596
AMP
Genome assembly (visualization)
461
hg19
369
GRCh38
Lab
555
AMP-T2D consortium
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
stomach
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
596 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
1
2
1
tissue
liver
145
20
2
3
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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