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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
DNase-seq
24
ATAC-seq
1
snATAC-seq
Assay category
591
DNA binding
202
Transcription
64
DNA accessibility
13
DNA methylation
10
3D chromatin structure
1
DNA sequencing
Date released
35
June, 2019
21
May, 2022
3
November, 2018
2
August, 2017
1
February, 2021
1
January, 2018
1
October, 2019
Available data
61
bed narrowPeak
60
bigWig
41
bam
39
bed bed3+
39
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
4
fastq
1
bed bed3
1
txt
Organism
64
Homo sapiens
Biosample type
59
tissue
4
primary cell
1
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
64
AMP
Genome assembly (visualization)
63
hg19
41
GRCh38
Lab
44
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
64 results
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DNase-seq
ATAC-seq
snATAC-seq
tissue
liver
2
20
muscle of arm
17
muscle of leg
13
right lobe of liver
2
1
skeletal muscle tissue
1
1
+ See 2 more…
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
skeletal muscle cell
1
cell line
HepG2
1
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