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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
Assay category
705
DNA binding
Transcription
62
DNA accessibility
14
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Target of assay
378
transcription factor
181
histone modification
180
histone
143
control
93
narrow histone mark
86
broad histone mark
82
recombinant protein
68
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
165
August, 2017
63
December, 2017
50
May, 2020
49
November, 2018
23
October, 2018
22
August, 2021
12
June, 2019
6
October, 2019
Available data
612
bam
542
fastq
507
bigWig
471
bed narrowPeak
367
bigBed narrowPeak
108
tagAlign
59
bed broadPeak
58
bigBed broadPeak
17
bed bed3+
3
tar
Organism
705
Homo sapiens
Biosample type
378
cell line
229
tissue
82
in vitro differentiated cells
16
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
705
AMP
Genome assembly (visualization)
505
hg19
435
GRCh38
Lab
687
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
11
inconsistent ontology term
Audit category:
30
missing controlled_by
Audit category:
33
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
705 results
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ChIP-seq
cell line
HepG2
378
tissue
liver
145
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
+ See 3 more…
in vitro differentiated cells
adipocyte
67
hepatocyte
15
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
hepatocyte
4
See all biosamples
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