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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
4
Hi-C
Assay category
552
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
23
August, 2021
5
October, 2019
1
December, 2018
1
July, 2019
1
March, 2020
Available data
510
bam
453
fastq
433
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
556
Homo sapiens
Biosample type
380
cell line
156
tissue
15
in vitro differentiated cells
5
primary cell
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
107
vasculature
104
blood vessel
97
heart
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
556
AMP
Genome assembly (visualization)
432
hg19
360
GRCh38
Lab
537
AMP-T2D consortium
19
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
556 results
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ChIP-seq
Hi-C
cell line
HepG2
378
2
tissue
liver
145
1
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
endothelial cell of hepatic sinusoid
1
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