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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
ChIP-seq
4
Hi-C
Assay category
587
DNA binding
198
Transcription
32
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
127
histone modification
126
histone
119
control
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
58
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
40
October, 2019
23
August, 2021
1
December, 2018
1
July, 2019
1
March, 2020
Available data
545
bam
457
bigWig
453
fastq
437
bed narrowPeak
376
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
591
Homo sapiens
Biosample type
380
cell line
191
tissue
15
in vitro differentiated cells
5
primary cell
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
137
heart
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
591
AMP
Genome assembly (visualization)
456
hg19
384
GRCh38
Lab
572
AMP-T2D consortium
19
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
591 results
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ChIP-seq
Hi-C
cell line
HepG2
378
2
tissue
liver
145
1
tibial nerve
35
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
endothelial cell of hepatic sinusoid
1
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