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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
548
ChIP-seq
Assay category
548
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
18
August, 2021
5
October, 2019
Available data
506
bam
452
fastq
429
bigWig
410
bed narrowPeak
352
bigBed narrowPeak
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
bed bed3+
3
tar
Organism
548
Homo sapiens
Biosample type
378
cell line
155
tissue
15
in vitro differentiated cells
primary cell
Organ
548
liver
209
brain
148
pancreas
141
connective tissue
89
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
epithelium
37
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
548
AMP
Genome assembly (visualization)
426
hg19
357
GRCh38
Lab
530
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
548 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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