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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
499
ChIP-seq
Assay category
499
DNA binding
188
Transcription
23
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
107
control
100
histone modification
99
histone
66
recombinant protein
58
narrow histone mark
41
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
November, 2018
48
August, 2017
18
August, 2021
5
October, 2019
Available data
457
bam
403
fastq
381
bigWig
362
bed narrowPeak
304
bigBed narrowPeak
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
bed bed3+
3
tar
Organism
499
Homo sapiens
Biosample type
333
cell line
151
tissue
15
in vitro differentiated cells
primary cell
Organ
499
liver
209
brain
148
pancreas
141
connective tissue
129
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
45
blood
45
bodily fluid
37
epithelium
37
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
499
AMP
Genome assembly (visualization)
380
hg19
309
GRCh38
Lab
481
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
month_released!
November, 2018
BIOSAMPLE
ASSAY
499 results
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Clear Filters
ChIP-seq
cell line
HepG2
333
tissue
liver
141
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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