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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
586
ChIP-seq
Assay category
586
DNA binding
251
Transcription
78
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
343
transcription factor
123
histone modification
122
histone
117
control
82
recombinant protein
66
narrow histone mark
59
RNA binding protein
56
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
28
October, 2019
22
August, 2021
6
February, 2021
5
May, 2019
Available data
544
bam
457
bigWig
452
fastq
438
bed narrowPeak
373
bigBed narrowPeak
92
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
586
Homo sapiens
Biosample type
384
cell line
183
tissue
15
in vitro differentiated cells
4
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
586
AMP
Genome assembly (visualization)
454
hg19
385
GRCh38
Lab
568
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
586 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
smooth muscle cell of the coronary artery
6
tissue
liver
145
tibial artery
23
right lobe of liver
10
coronary artery
5
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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