Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
ChIP-seq
Assay category
472
DNA binding
6
DNA accessibility
5
DNA methylation
5
Transcription
1
3D chromatin structure
Target of assay
333
transcription factor
85
control
82
recombinant protein
57
RNA binding protein
51
histone modification
50
histone
29
broad histone mark
23
chromatin remodeller
21
narrow histone mark
5
other context
5
other post-translational modification
Date released
315
November, 2017
63
December, 2017
55
November, 2018
25
August, 2017
7
December, 2018
7
January, 2019
Available data
530
bam
472
fastq
444
bigWig
425
bed narrowPeak
364
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
472
Homo sapiens
Biosample type
360
cell line
97
tissue
15
in vitro differentiated cells
Organ
452
liver
147
pancreas
90
connective tissue
72
epithelium
60
blood
60
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
472
AMP
Genome assembly (visualization)
392
hg19
345
GRCh38
Lab
472
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
472 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
360
tissue
liver
67
spleen
20
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
Download