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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
Assay category
510
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
53
December, 2017
50
May, 2020
49
November, 2018
29
August, 2017
20
August, 2021
2
October, 2019
Available data
481
bam
427
fastq
402
bigWig
384
bed narrowPeak
331
bigBed narrowPeak
68
tagAlign
50
bed broadPeak
50
bigBed broadPeak
5
bed bed3+
3
tar
Organism
510
Homo sapiens
Biosample type
369
cell line
130
tissue
8
in vitro differentiated cells
3
primary cell
Organ
510
liver
148
brain
140
pancreas
109
connective tissue
85
epithelium
77
heart
60
blood
60
bodily fluid
57
vasculature
54
blood vessel
53
adipose tissue
37
kidney
32
limb
20
artery
19
musculature of body
19
nerve
18
embryo
16
spleen
8
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
510
AMP
Genome assembly (visualization)
399
hg19
332
GRCh38
Lab
493
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
510 results
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Clear Filters
ChIP-seq
cell line
HepG2
369
tissue
liver
123
right lobe of liver
7
in vitro differentiated cells
hepatocyte
8
primary cell
hepatocyte
3
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