Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
23
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
5
August, 2017
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
185
bigWig
174
tsv
166
bam
23
bed narrowPeak
10
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bigBed narrowPeak
1
csv
1
hdf5
1
vcf
Organism
233
Homo sapiens
Biosample type
202
tissue
23
cell line
8
primary cell
Organ
720
pancreas
522
connective tissue
416
adipose tissue
376
epithelium
233
liver
229
heart
221
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
191
hg19
166
GRCh38
Lab
180
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
DNase-seq
BIOSAMPLE
ASSAY
233 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
3
1
1
1
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
Download