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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
19
total RNA-seq
3
Hi-C
2
ATAC-seq
2
DNase-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Assay category
19
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Date released
13
August, 2021
5
December, 2019
5
January, 2019
2
February, 2021
2
July, 2019
2
June, 2019
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2019
Available data
20
tsv
15
bam
14
bigWig
7
fastq
4
bed bed3+
4
bed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
33
Homo sapiens
Biosample type
tissue
23
cell line
10
primary cell
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
33
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
20
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
Hi-C
ATAC-seq
DNase-seq
STARR-seq
pCHi-C
RRBS
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
1
2
2
1
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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