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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
190
bigWig
174
tsv
171
bam
28
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
234
Homo sapiens
Biosample type
203
tissue
23
cell line
8
primary cell
Organ
721
pancreas
522
connective tissue
416
adipose tissue
379
epithelium
234
liver
229
heart
224
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
191
hg19
166
GRCh38
Lab
181
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
234 results
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total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
3
1
1
1
1
1
right lobe of liver
3
1
1
2
1
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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