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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
27
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
189
bigWig
174
tsv
170
bam
27
bed narrowPeak
10
fastq
7
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
5
bigBed narrowPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
233
Homo sapiens
Biosample type
200
tissue
23
cell line
10
primary cell
Organ
634
pancreas
523
connective tissue
411
adipose tissue
392
epithelium
302
kidney
259
heart
233
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
194
hg19
170
GRCh38
Lab
180
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
233 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
1
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
14
1
2
2
2
1
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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