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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
251
total RNA-seq
84
RNA microarray
35
ATAC-seq
6
DNase-seq
5
WGBS
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
255
Transcription
41
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
153
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
9
July, 2019
8
February, 2023
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2020
1
May, 2021
Available data
747
bam
679
bigWig
464
fastq
449
bed narrowPeak
358
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
csv
1
vcf
Organism
946
Homo sapiens
Biosample type
518
tissue
399
cell line
15
in vitro differentiated cells
14
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
945
AMP
1
T1D
Genome assembly (visualization)
692
hg19
597
GRCh38
Lab
875
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
BIOSAMPLE
ASSAY
946 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
378
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
megakaryocyte
1
See all biosamples
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